Dairy farmer Heather Campbell, who manages about 200 cows on a property at Cohuna, said thousands of dead juvenile carp were rotting in her paddocks following widespread flooding.
“I have a really poor sense of smell and I can smell it. So that must mean it's really bad,” she said.
“I've got no idea how long it takes to clear what's effectively a carp plague out of the system.
“It's not just at our end; it's through everywhere and it's going to get into the Murray River.”
Ms Campbell said the carp got into the irrigation system, with nearby properties now dealing with the same problem.
“The scale is just so much more than we've had before. In the past, we've had a few fish, not a few thousand, every time we water a paddock,” she said.
The carp are appearing in waves and Ms Campbell is concerned her dairy cows could be exposed to botulism or other diseases by eating the decaying remains, potentially killing them or affecting their milk.
“Cows aren't meant to be fed any animal material at all,” she said.
Ms Campbell plans to erect temporary fencing around the dead fish to keep her cows clear but expected the “feral” stench to worsen ahead of the recent streak of extremely warm days.
The October floods caused a large carp breeding event in creeks and rivers across much of the southern Murray-Darling Basin, according to the North Central Catchment Management Authority.
“The timing of the floods late in the season meant adult carp were more active in NSW and Victorian waterways, and bred more than if the flooding had been earlier,“ it said.
Carp are known to reproduce in floodplains, with their larvae and juvenile fish dispersing and migrating back to main waterways.
But not all make it.
“It is common for large numbers of these fish, particularly juveniles, to be stranded on the floodplain where they die,” a Department of Energy, Environment and Climate Action spokesperson said.
Authorities are urging farmers to move livestock away from areas with decomposing fish and provide alternative drinking water if dams and other sources are contaminated.
Only when the dead fish are removed or fully decomposed should livestock be reintroduced to affected land.
The population boom could also lead to the pest fish spreading further into the previously carp-free upper reaches of the river system, the Invasive Species Council said.